Open Source Software

The mutational landscape of the SCAN-B real-world primary breast cancer transcriptome
Breast cancer is a disease of genomic alterations, of which the panorama of somatic mutations and how these relate to subtypes and …
DOI PDF bioRxiv Preprint Code Dataset Press Release
The mutational landscape of the SCAN-B real-world primary breast cancer transcriptome
A crowdsourced set of curated structural variants for the human genome
A high quality benchmark for small variants encompassing 88 to 90% of the reference genome has been developed for seven Genome in a …
DOI PDF bioRxiv Preprint Code
A crowdsourced set of curated structural variants for the human genome
Defining the mutational landscape of 3,217 primary breast cancer transcriptomes through large-scale RNA-seq within the Sweden Cancerome Analysis Network: Breast Project (SCAN-B; NCT03430492)
Background
Breast cancer is a disease of genomic alterations, of which the complete panorama of somatic mutations and how these relate …
DOI
Defining the mutational landscape of 3,217 primary breast cancer transcriptomes through large-scale RNA-seq within the Sweden Cancerome Analysis Network: Breast Project (SCAN-B; NCT03430492)
Bioconda: sustainable and comprehensive software distribution for the life sciences
We present Bioconda (https://bioconda.github.io), a distribution of bioinformatics software for the lightweight, multiplatform and …
DOI bioRxiv Preprint Project Code
Bioconda: sustainable and comprehensive software distribution for the life sciences
TopHat-Recondition: A post-processor for TopHat unmapped reads
Background
TopHat is a popular spliced junction mapper for RNA sequencing data, and writes files in the BAM format – the binary version …
DOI PDF bioRxiv Preprint Code
TopHat-Recondition: A post-processor for TopHat unmapped reads
FreeBSD Security Event Auditing
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FreeBSD Security Event Auditing